Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Here's a possible implementation of the `rref` function using Numba's JIT compiler with the `nopython` mode. Note that I have added type annotations for the input arguments and local variables to help Numba optimize the code.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 | import numba as nb import numpy as np @nb.njit(nb.types.List(nb.types.List(nb.types.Set(nb.types.int64)))(nb.types.Array(nb.types.int64, 2D, 'C'), nb.types.intp), cache=True, nogil=True, fastmath=True) def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set(range(i, i+1)) for i in range(matrix.shape[0])] while col + extra < matrix.shape[1] - 1 and col < matrix.shape[0]: if matrix[col, col + extra] == 0: if np.all(matrix[:, col] == 0): extra += 1 continue other = np.argwhere(matrix[:, col + extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = matrix[other], matrix[col] used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col + extra) pivot = matrix[col, col + extra] if col + extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH - 1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH - 2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:, col + extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col] * matrix[i, col + extra] else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] %= PH col += 1 matrix %= PH return [sorted(x) for x in used_for_row] |
I extracted the following code from that output:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 | import numba as nb import numpy as np @nb.njit(nb.types.List(nb.types.List(nb.types.Set(nb.types.int64)))(nb.types.Array(nb.types.int64, 2D, 'C'), nb.types.intp), cache=True, nogil=True, fastmath=True) def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set(range(i, i+1)) for i in range(matrix.shape[0])] while col + extra < matrix.shape[1] - 1 and col < matrix.shape[0]: if matrix[col, col + extra] == 0: if np.all(matrix[:, col] == 0): extra += 1 continue other = np.argwhere(matrix[:, col + extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = matrix[other], matrix[col] used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col + extra) pivot = matrix[col, col + extra] if col + extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH - 1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH - 2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:, col + extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col] * matrix[i, col + extra] else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] %= PH col += 1 matrix %= PH return [sorted(x) for x in used_for_row] |
Running the following program:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 | import numba as nb import numpy as np @nb.njit(nb.types.List(nb.types.List(nb.types.Set(nb.types.int64)))(nb.types.Array(nb.types.int64, 2D, 'C'), nb.types.intp), cache=True, nogil=True, fastmath=True) def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set(range(i, i+1)) for i in range(matrix.shape[0])] while col + extra < matrix.shape[1] - 1 and col < matrix.shape[0]: if matrix[col, col + extra] == 0: if np.all(matrix[:, col] == 0): extra += 1 continue other = np.argwhere(matrix[:, col + extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = matrix[other], matrix[col] used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col + extra) pivot = matrix[col, col + extra] if col + extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH - 1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH - 2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:, col + extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col] * matrix[i, col + extra] else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] %= PH col += 1 matrix %= PH return [sorted(x) for x in used_for_row] arr = np.array([[1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, -20], [1, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -14], [0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, -1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -9], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, -40], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]]) answer = rref(arr, 37) expected = [[0, 38], [0, 38], [0, 6, 28, 35, 38], [0, 6, 18, 21, 28, 35, 38], [0, 6, 28, 35, 38], [0, 6, 21, 28, 35, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 9, 10, 23, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 25, 27, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 24, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 33, 38], [0, 22, 29, 38], [0, 22, 29, 38], [0, 6, 28, 35, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [14, 18, 21, 28, 35]] assert answer == expected, f'Wrong answer; got {answer} instead of {expected}' print('All tests passed') |
File "/usr/src/app/main.py", line 5
@nb.njit(nb.types.List(nb.types.List(nb.types.Set(nb.types.int64)))(nb.types.Array(nb.types.int64, 2D, 'C'), nb.types.intp), cache=True, nogil=True, fastmath=True)
^
SyntaxError: invalid decimal literal
Testing if the previous output contains the string All tests passed
: False
Testing if the previous output contains the string njit
: True
Testing if the previous output contains the string nopython
: False
Testing if the previous output contains the string import numba
: True
Testing if the previous output contains the string from numba
: False
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Here is the function rewritten to use numba with nopython mode:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 | from numba import jit, int32, int64, boolean, float64, void import numpy as np @jit(void(int64[:,:], int64), nopython=True) def rref_numba(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set(range(matrix.shape[0])) for _ in range(matrix.shape[0])] used_for_row[:] = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = matrix[other], matrix[col] used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return matrix, pivots # Example usage: matrix = np.array([[1,2,3],[4,5,6],[7,8,9]]) graphlen = 10 rref_numba(matrix, graphlen) print(matrix) |
I extracted the following code from that output:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 | from numba import jit, int32, int64, boolean, float64, void import numpy as np @jit(void(int64[:,:], int64), nopython=True) def rref_numba(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set(range(matrix.shape[0])) for _ in range(matrix.shape[0])] used_for_row[:] = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = matrix[other], matrix[col] used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return matrix, pivots # Example usage: matrix = np.array([[1,2,3],[4,5,6],[7,8,9]]) graphlen = 10 rref_numba(matrix, graphlen) print(matrix) |
Running the following program:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 | from numba import jit, int32, int64, boolean, float64, void import numpy as np @jit(void(int64[:,:], int64), nopython=True) def rref_numba(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set(range(matrix.shape[0])) for _ in range(matrix.shape[0])] used_for_row[:] = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = matrix[other], matrix[col] used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return matrix, pivots # Example usage: matrix = np.array([[1,2,3],[4,5,6],[7,8,9]]) graphlen = 10 rref_numba(matrix, graphlen) print(matrix) arr = np.array([[1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, -20], [1, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -14], [0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, -1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -9], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, -40], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]]) answer = rref(arr, 37) expected = [[0, 38], [0, 38], [0, 6, 28, 35, 38], [0, 6, 18, 21, 28, 35, 38], [0, 6, 28, 35, 38], [0, 6, 21, 28, 35, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 9, 10, 23, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 25, 27, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 24, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 33, 38], [0, 22, 29, 38], [0, 22, 29, 38], [0, 6, 28, 35, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [14, 18, 21, 28, 35]] assert answer == expected, f'Wrong answer; got {answer} instead of {expected}' print('All tests passed') |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 | Traceback (most recent call last): File "/usr/src/app/main.py", line 5, in <module> @jit(void(int64[:,:], int64), nopython=True) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/dist-packages/numba/core/decorators.py", line 236, in wrapper disp.compile(sig) File "/usr/local/lib/python3.11/dist-packages/numba/core/dispatcher.py", line 957, in compile cres = self._compiler.compile(args, return_type) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/dist-packages/numba/core/dispatcher.py", line 129, in compile raise retval File "/usr/local/lib/python3.11/dist-packages/numba/core/dispatcher.py", line 139, in _compile_cached retval = self._compile_core(args, return_type) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/dist-packages/numba/core/dispatcher.py", line 152, in _compile_core cres = compiler.compile_extra(self.targetdescr.typing_context, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/dist-packages/numba/core/compiler.py", line 751, in compile_extra return pipeline.compile_extra(func) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/dist-packages/numba/core/compiler.py", line 445, in compile_extra return self._compile_bytecode() ^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/dist-packages/numba/core/compiler.py", line 513, in _compile_bytecode return self._compile_core() ^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/dist-packages/numba/core/compiler.py", line 492, in _compile_core raise e File "/usr/local/lib/python3.11/dist-packages/numba/core/compiler.py", line 479, in _compile_core pm.run(self.state) File "/usr/local/lib/python3.11/dist-packages/numba/core/compiler_machinery.py", line 368, in run raise patched_exception File "/usr/local/lib/python3.11/dist-packages/numba/core/compiler_machinery.py", line 356, in run self._runPass(idx, pass_inst, state) File "/usr/local/lib/python3.11/dist-packages/numba/core/compiler_lock.py", line 35, in _acquire_compile_lock return func(<em>args, </em>*kwargs) ^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/dist-packages/numba/core/compiler_machinery.py", line 311, in _runPass mutated |= check(pss.run_pass, internal_state) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/dist-packages/numba/core/compiler_machinery.py", line 273, in check mangled = func(compiler_state) ^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/dist-packages/numba/core/typed_passes.py", line 112, in run_pass typemap, return_type, calltypes, errs = type_inference_stage( ^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/dist-packages/numba/core/typed_passes.py", line 93, in type_inference_stage errs = infer.propagate(raise_errors=raise_errors) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/dist-packages/numba/core/typeinfer.py", line 1091, in propagate raise errors[0] numba.core.errors.TypingError: Failed in nopython mode pipeline (step: nopython frontend) No implementation of function Function(<built-in function array>) found for signature:</p> <blockquote> <blockquote> <blockquote> <p>array(array(int64, 2d, C))</p> </blockquote> </blockquote> </blockquote> <p>There are 2 candidate implementations: - Of which 2 did not match due to: Overload in function 'impl_np_array': File: numba/np/arrayobj.py: Line 5421. With argument(s): '(array(int64, 2d, C))': Rejected as the implementation raised a specific error: TypingError: Failed in nopython mode pipeline (step: nopython frontend) No implementation of function Function(<intrinsic np_array>) found for signature:</p> <pre><code> >>> np_array(array(int64, 2d, C), none) There are 2 candidate implementations: - Of which 2 did not match due to: Intrinsic in function 'np_array': File: numba/np/arrayobj.py: Line 5395. With argument(s): '(array(int64, 2d, C), none)': Rejected as the implementation raised a specific error: TypingError: array(int64, 2d, C) not allowed in a homogeneous sequence raised from /usr/local/lib/python3.11/dist-packages/numba/core/typing/npydecl.py:482 During: resolving callee type: Function(<intrinsic np_array>) During: typing of call at /usr/local/lib/python3.11/dist-packages/numba/np/arrayobj.py (5432) File "../../local/lib/python3.11/dist-packages/numba/np/arrayobj.py", line 5432: def impl(object, dtype=None): return np_array(object, dtype) ^ </code></pre> <p>raised from /usr/local/lib/python3.11/dist-packages/numba/core/typeinfer.py:1091 During: resolving callee type: Function(<built-in function array>) During: typing of call at /usr/src/app/main.py (55) File "main.py", line 55: def rref_numba(matrix, graphlen): <source elided></p> <pre><code>matrix = np.array(matrix)%PH ^ </code></pre> <p> |
Testing if the previous output contains the string All tests passed
: False
Testing if the previous output contains the string njit
: False
Testing if the previous output contains the string nopython
: True
Testing if the previous output contains the string import numba
: False
Testing if the previous output contains the string from numba
: True
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Here is one way to rewrite the function using Numba and the `nopython` mode:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 | import numba as nb @nb.njit(nb.types.Array(nb.int64, 2,(None, None)), nb.int64)(cache=True) def rref_numba(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if all(matrix[:,col] == 0): extra += 1 continue other = nb.argwhere(matrix[:,col+extra] != 0)[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = matrix[other], matrix[col] used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH-1 else: assert abs(pivot) == 2 or abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = nb.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = matrix%PH return [sorted(x) for x in used_for_row] |
I extracted the following code from that output:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 | import numba as nb @nb.njit(nb.types.Array(nb.int64, 2,(None, None)), nb.int64)(cache=True) def rref_numba(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if all(matrix[:,col] == 0): extra += 1 continue other = nb.argwhere(matrix[:,col+extra] != 0)[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = matrix[other], matrix[col] used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH-1 else: assert abs(pivot) == 2 or abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = nb.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = matrix%PH return [sorted(x) for x in used_for_row] |
Running the following program:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 | import numba as nb @nb.njit(nb.types.Array(nb.int64, 2,(None, None)), nb.int64)(cache=True) def rref_numba(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if all(matrix[:,col] == 0): extra += 1 continue other = nb.argwhere(matrix[:,col+extra] != 0)[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = matrix[other], matrix[col] used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH-1 else: assert abs(pivot) == 2 or abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = nb.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = matrix%PH return [sorted(x) for x in used_for_row] arr = np.array([[1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, -20], [1, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -14], [0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, -1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -9], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, -40], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]]) answer = rref(arr, 37) expected = [[0, 38], [0, 38], [0, 6, 28, 35, 38], [0, 6, 18, 21, 28, 35, 38], [0, 6, 28, 35, 38], [0, 6, 21, 28, 35, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 9, 10, 23, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 25, 27, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 24, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 33, 38], [0, 22, 29, 38], [0, 22, 29, 38], [0, 6, 28, 35, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [14, 18, 21, 28, 35]] assert answer == expected, f'Wrong answer; got {answer} instead of {expected}' print('All tests passed') |
Traceback (most recent call last):
File "/usr/src/app/main.py", line 4, in <module>
@nb.njit(nb.types.Array(nb.int64, 2,(None, None)), nb.int64)(cache=True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.11/dist-packages/numba/core/types/abstract.py", line 67, in __call__
inst = type.__call__(cls, *args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.11/dist-packages/numba/core/types/npytypes.py", line 461, in __init__
super(Array, self).__init__(dtype, ndim, layout, name=name)
File "/usr/local/lib/python3.11/dist-packages/numba/core/types/common.py", line 58, in __init__
raise NumbaValueError("Invalid layout '%s'" % layout)
~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
TypeError: not all arguments converted during string formatting
Testing if the previous output contains the string All tests passed
: False
Testing if the previous output contains the string njit
: True
Testing if the previous output contains the string nopython
: False
Testing if the previous output contains the string import numba
: True
Testing if the previous output contains the string from numba
: False
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Here's a possible implementation of the `rref` function using Numba and its nopython mode:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 | import numba as nb import numpy as np @nb.njit(parallel=False, fastmath=True) def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = matrix[other], matrix[col] used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row] |
I extracted the following code from that output:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 | import numba as nb import numpy as np @nb.njit(parallel=False, fastmath=True) def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = matrix[other], matrix[col] used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row] |
Running the following program:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 | import numba as nb import numpy as np @nb.njit(parallel=False, fastmath=True) def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = matrix[other], matrix[col] used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row] arr = np.array([[1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, -20], [1, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -14], [0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, -1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -9], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, -40], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]]) answer = rref(arr, 37) expected = [[0, 38], [0, 38], [0, 6, 28, 35, 38], [0, 6, 18, 21, 28, 35, 38], [0, 6, 28, 35, 38], [0, 6, 21, 28, 35, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 9, 10, 23, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 25, 27, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 24, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 33, 38], [0, 22, 29, 38], [0, 22, 29, 38], [0, 6, 28, 35, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [14, 18, 21, 28, 35]] assert answer == expected, f'Wrong answer; got {answer} instead of {expected}' print('All tests passed') |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 | Traceback (most recent call last): File "/usr/src/app/main.py", line 61, in <module> answer = rref(arr, 37) ^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/dist-packages/numba/core/dispatcher.py", line 468, in _compile_for_args error_rewrite(e, 'typing') File "/usr/local/lib/python3.11/dist-packages/numba/core/dispatcher.py", line 409, in error_rewrite raise e.with_traceback(None) numba.core.errors.TypingError: Failed in nopython mode pipeline (step: nopython frontend) No implementation of function Function(<built-in function array>) found for signature:</p> <blockquote> <blockquote> <blockquote> <p>array(array(int64, 2d, C))</p> </blockquote> </blockquote> </blockquote> <p>There are 2 candidate implementations: - Of which 2 did not match due to: Overload in function 'impl_np_array': File: numba/np/arrayobj.py: Line 5421. With argument(s): '(array(int64, 2d, C))': Rejected as the implementation raised a specific error: TypingError: Failed in nopython mode pipeline (step: nopython frontend) No implementation of function Function(<intrinsic np_array>) found for signature:</p> <pre><code> >>> np_array(array(int64, 2d, C), none) There are 2 candidate implementations: - Of which 2 did not match due to: Intrinsic in function 'np_array': File: numba/np/arrayobj.py: Line 5395. With argument(s): '(array(int64, 2d, C), none)': Rejected as the implementation raised a specific error: TypingError: array(int64, 2d, C) not allowed in a homogeneous sequence raised from /usr/local/lib/python3.11/dist-packages/numba/core/typing/npydecl.py:482 During: resolving callee type: Function(<intrinsic np_array>) During: typing of call at /usr/local/lib/python3.11/dist-packages/numba/np/arrayobj.py (5432) File "../../local/lib/python3.11/dist-packages/numba/np/arrayobj.py", line 5432: def impl(object, dtype=None): return np_array(object, dtype) ^ </code></pre> <p>raised from /usr/local/lib/python3.11/dist-packages/numba/core/typeinfer.py:1091 During: resolving callee type: Function(<built-in function array>) During: typing of call at /usr/src/app/main.py (54) File "main.py", line 54: def rref(matrix, graphlen): <source elided></p> <pre><code>matrix = np.array(matrix)%PH ^ </code></pre> <p> |
Testing if the previous output contains the string All tests passed
: False
Testing if the previous output contains the string njit
: True
Testing if the previous output contains the string nopython
: False
Testing if the previous output contains the string import numba
: True
Testing if the previous output contains the string from numba
: False
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Here is a possible implementation of the function using Numba and its nopython mode:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 | from numba import njit, int64, float64 import numpy as np @njit(cache=True, fastmath=True, nogil=True) def rref(matrix, graphlen, PH=16): extra = 0 col = 0 pivots = [] used_for_row = [set(range(matrix.shape[0])) for _ in range(matrix.shape[0])] used_for_row[:] = [set([i]) for i in range(matrix.shape[0])] while col + extra < matrix.shape[1] - 1 and col < matrix.shape[0]: if matrix[col, col + extra] == 0: if np.all(matrix[:, col] == 0): extra += 1 continue other = np.argwhere(matrix[:, col + extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = matrix[other], matrix[col] used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col + extra) pivot = matrix[col, col + extra] if col + extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH - 1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH - 2 pivot //= 2 matrix[col] = matrix[col] * pivot % PH others = np.argwhere(matrix[:, col + extra] != 0).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] = (matrix[i] - matrix[col] * matrix[i, col + extra]) % PH else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] = matrix[i] % PH col += 1 matrix = matrix % PH return [sorted(x) for x in used_for_row] |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 | from numba import njit, int64, float64 import numpy as np @njit(cache=True, fastmath=True, nogil=True) def rref(matrix, graphlen, PH=16): extra = 0 col = 0 pivots = [] used_for_row = [set(range(matrix.shape[0])) for _ in range(matrix.shape[0])] used_for_row[:] = [set([i]) for i in range(matrix.shape[0])] while col + extra < matrix.shape[1] - 1 and col < matrix.shape[0]: if matrix[col, col + extra] == 0: all_zero = True for i in range(matrix.shape[0]): if matrix[i, col] != 0: all_zero = False break if all_zero: extra += 1 continue other = -1 for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: other = i break if other < col: extra += 1 continue matrix[col], matrix[other] = matrix[other], matrix[col] used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col + extra) pivot = matrix[col, col + extra] if col + extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH - 1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH - 2 pivot //= 2 matrix[col] = matrix[col] * pivot % PH others = [] for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: others.append(i) for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] = (matrix[i] - matrix[col] * matrix[i, col + extra]) % PH else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] = matrix[i] % PH col += 1 matrix = matrix % PH for i in range(matrix.shape[0]): used_for_row[i] = sorted(used_for_row[i]) return used_for_row |
1 2 3 4 | from numba import njit, int64, float64 import numpy as np @ |
I extracted the following code from that output:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 | from numba import njit, int64, float64 import numpy as np @njit(cache=True, fastmath=True, nogil=True) def rref(matrix, graphlen, PH=16): extra = 0 col = 0 pivots = [] used_for_row = [set(range(matrix.shape[0])) for _ in range(matrix.shape[0])] used_for_row[:] = [set([i]) for i in range(matrix.shape[0])] while col + extra < matrix.shape[1] - 1 and col < matrix.shape[0]: if matrix[col, col + extra] == 0: all_zero = True for i in range(matrix.shape[0]): if matrix[i, col] != 0: all_zero = False break if all_zero: extra += 1 continue other = -1 for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: other = i break if other < col: extra += 1 continue matrix[col], matrix[other] = matrix[other], matrix[col] used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col + extra) pivot = matrix[col, col + extra] if col + extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH - 1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH - 2 pivot //= 2 matrix[col] = matrix[col] * pivot % PH others = [] for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: others.append(i) for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] = (matrix[i] - matrix[col] * matrix[i, col + extra]) % PH else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] = matrix[i] % PH col += 1 matrix = matrix % PH for i in range(matrix.shape[0]): used_for_row[i] = sorted(used_for_row[i]) return used_for_row |
Running the following program:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 | from numba import njit, int64, float64 import numpy as np @njit(cache=True, fastmath=True, nogil=True) def rref(matrix, graphlen, PH=16): extra = 0 col = 0 pivots = [] used_for_row = [set(range(matrix.shape[0])) for _ in range(matrix.shape[0])] used_for_row[:] = [set([i]) for i in range(matrix.shape[0])] while col + extra < matrix.shape[1] - 1 and col < matrix.shape[0]: if matrix[col, col + extra] == 0: all_zero = True for i in range(matrix.shape[0]): if matrix[i, col] != 0: all_zero = False break if all_zero: extra += 1 continue other = -1 for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: other = i break if other < col: extra += 1 continue matrix[col], matrix[other] = matrix[other], matrix[col] used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col + extra) pivot = matrix[col, col + extra] if col + extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH - 1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH - 2 pivot //= 2 matrix[col] = matrix[col] * pivot % PH others = [] for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: others.append(i) for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] = (matrix[i] - matrix[col] * matrix[i, col + extra]) % PH else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] = matrix[i] % PH col += 1 matrix = matrix % PH for i in range(matrix.shape[0]): used_for_row[i] = sorted(used_for_row[i]) return used_for_row arr = np.array([[1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, -20], [1, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -14], [0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, -1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -9], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, -40], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]]) answer = rref(arr, 37) expected = [[0, 38], [0, 38], [0, 6, 28, 35, 38], [0, 6, 18, 21, 28, 35, 38], [0, 6, 28, 35, 38], [0, 6, 21, 28, 35, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 9, 10, 23, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 25, 27, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 24, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 33, 38], [0, 22, 29, 38], [0, 22, 29, 38], [0, 6, 28, 35, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [14, 18, 21, 28, 35]] assert answer == expected, f'Wrong answer; got {answer} instead of {expected}' print('All tests passed') |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 | Traceback (most recent call last): File "/usr/src/app/main.py", line 72, in <module> answer = rref(arr, 37) ^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/dist-packages/numba/core/dispatcher.py", line 468, in _compile_for_args error_rewrite(e, 'typing') File "/usr/local/lib/python3.11/dist-packages/numba/core/dispatcher.py", line 409, in error_rewrite raise e.with_traceback(None) numba.core.errors.TypingError: Failed in nopython mode pipeline (step: nopython frontend) No implementation of function Function(<built-in function setitem>) found for signature:</p> <blockquote> <blockquote> <blockquote> <p>setitem(list(set(int64))<iv=None>, int64, list(int64)<iv=None>)</p> </blockquote> </blockquote> </blockquote> <p>There are 16 candidate implementations: - Of which 14 did not match due to: Overload of function 'setitem': File: <numerous>: Line N/A. With argument(s): '(list(set(int64))<iv=None>, int64, list(int64)<iv=None>)': No match. - Of which 2 did not match due to: Overload in function 'SetItemSequence.generic': File: numba/core/typing/collections.py: Line 56. With argument(s): '(list(set(int64))<iv=None>, int64, list(int64)<iv=None>)': Rejected as the implementation raised a specific error: TypingError: invalid setitem with value of list(int64)<iv=None> to element of set(int64) raised from /usr/local/lib/python3.11/dist-packages/numba/core/typing/collections.py:65 During: typing of setitem at /usr/src/app/main.py (65) File "main.py", line 65: def rref(matrix, graphlen, PH=16): <source elided> for i in range(matrix.shape[0]): used_for_row[i] = sorted(used_for_row[i]) ^ |
Testing if the previous output contains the string All tests passed
: False
Testing if the previous output contains the string njit
: True
Testing if the previous output contains the string nopython
: False
Testing if the previous output contains the string import numba
: False
Testing if the previous output contains the string from numba
: True