Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Here's a Numba implementation of the `rref` function using `@njit` decorator for nopython mode:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 | import numpy as np from numba import njit @njit def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 # Pre-allocate pivots list (max size will be min of rows and columns) pivots = np.zeros(min(matrix.shape[0], matrix.shape[1]), dtype=np.int64) pivots_count = 0 # Create used_for_row as a 2D list equivalent used_for_row = np.zeros((matrix.shape[0], matrix.shape[0]), dtype=np.bool_) for i in range(matrix.shape[0]): used_for_row[i, i] = True # Ensure matrix is modulo PH for i in range(matrix.shape[0]): for j in range(matrix.shape[1]): matrix[i, j] %= PH while col + extra < matrix.shape[1] - 1 and col < matrix.shape[0]: # Check if current column is zero if matrix[col, col + extra] == 0: # Check if entire column is zero all_zero = True for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: all_zero = False break if all_zero: extra += 1 continue # Find last non-zero row other = -1 for i in range(matrix.shape[0] - 1, -1, -1): if matrix[i, col + extra] != 0: other = i break if other < col: extra += 1 continue # Swap rows for j in range(matrix.shape[1]): temp = matrix[col, j] matrix[col, j] = matrix[other, j] matrix[other, j] = temp # Swap used_for_row for j in range(matrix.shape[0]): temp = used_for_row[col, j] used_for_row[col, j] = used_for_row[other, j] used_for_row[other, j] = temp pivots[pivots_count] = col + extra pivots_count += 1 pivot = matrix[col, col + extra] # Validate pivot if col + extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH - 1 else: assert abs(pivot) == 2 or abs(pivot) == PH - 2 pivot //= 2 # Scale row for j in range(matrix.shape[1]): matrix[col, j] *= pivot matrix[col, j] %= PH # Find rows with non-zero entries in the current column for i in range(matrix.shape[0]): if i == col or matrix[i, col + extra] == 0: continue # Update used_for_row for j in range(matrix.shape[0]): if used_for_row[col, j]: used_for_row[i, j] = True # Eliminate entries if col < graphlen: factor = matrix[i, col + extra] for j in range(matrix.shape[1]): matrix[i, j] -= matrix[col, j] * factor else: while matrix[i, col + extra] != 0: for j in range(matrix.shape[1]): matrix[i, j] = (matrix[i, j] - matrix[col, j]) % PH # Ensure row is modulo PH for j in range(matrix.shape[1]): matrix[i, j] %= PH col += 1 # Convert used_for_row to list of lists with sorted indices result = [] for i in range(matrix.shape[0]): row_indices = [] for j in range(matrix.shape[0]): if used_for_row[i, j]: row_indices.append(j) result.append(row_indices) return result |
1 | result = rref(matrix, graphlen) |
I extracted the following code from that output:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 | import numpy as np from numba import njit @njit def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 # Pre-allocate pivots list (max size will be min of rows and columns) pivots = np.zeros(min(matrix.shape[0], matrix.shape[1]), dtype=np.int64) pivots_count = 0 # Create used_for_row as a 2D list equivalent used_for_row = np.zeros((matrix.shape[0], matrix.shape[0]), dtype=np.bool_) for i in range(matrix.shape[0]): used_for_row[i, i] = True # Ensure matrix is modulo PH for i in range(matrix.shape[0]): for j in range(matrix.shape[1]): matrix[i, j] %= PH while col + extra < matrix.shape[1] - 1 and col < matrix.shape[0]: # Check if current column is zero if matrix[col, col + extra] == 0: # Check if entire column is zero all_zero = True for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: all_zero = False break if all_zero: extra += 1 continue # Find last non-zero row other = -1 for i in range(matrix.shape[0] - 1, -1, -1): if matrix[i, col + extra] != 0: other = i break if other < col: extra += 1 continue # Swap rows for j in range(matrix.shape[1]): temp = matrix[col, j] matrix[col, j] = matrix[other, j] matrix[other, j] = temp # Swap used_for_row for j in range(matrix.shape[0]): temp = used_for_row[col, j] used_for_row[col, j] = used_for_row[other, j] used_for_row[other, j] = temp pivots[pivots_count] = col + extra pivots_count += 1 pivot = matrix[col, col + extra] # Validate pivot if col + extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH - 1 else: assert abs(pivot) == 2 or abs(pivot) == PH - 2 pivot //= 2 # Scale row for j in range(matrix.shape[1]): matrix[col, j] *= pivot matrix[col, j] %= PH # Find rows with non-zero entries in the current column for i in range(matrix.shape[0]): if i == col or matrix[i, col + extra] == 0: continue # Update used_for_row for j in range(matrix.shape[0]): if used_for_row[col, j]: used_for_row[i, j] = True # Eliminate entries if col < graphlen: factor = matrix[i, col + extra] for j in range(matrix.shape[1]): matrix[i, j] -= matrix[col, j] * factor else: while matrix[i, col + extra] != 0: for j in range(matrix.shape[1]): matrix[i, j] = (matrix[i, j] - matrix[col, j]) % PH # Ensure row is modulo PH for j in range(matrix.shape[1]): matrix[i, j] %= PH col += 1 # Convert used_for_row to list of lists with sorted indices result = [] for i in range(matrix.shape[0]): row_indices = [] for j in range(matrix.shape[0]): if used_for_row[i, j]: row_indices.append(j) result.append(row_indices) return result |
Running the following program:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 | import numpy as np from numba import njit @njit def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 # Pre-allocate pivots list (max size will be min of rows and columns) pivots = np.zeros(min(matrix.shape[0], matrix.shape[1]), dtype=np.int64) pivots_count = 0 # Create used_for_row as a 2D list equivalent used_for_row = np.zeros((matrix.shape[0], matrix.shape[0]), dtype=np.bool_) for i in range(matrix.shape[0]): used_for_row[i, i] = True # Ensure matrix is modulo PH for i in range(matrix.shape[0]): for j in range(matrix.shape[1]): matrix[i, j] %= PH while col + extra < matrix.shape[1] - 1 and col < matrix.shape[0]: # Check if current column is zero if matrix[col, col + extra] == 0: # Check if entire column is zero all_zero = True for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: all_zero = False break if all_zero: extra += 1 continue # Find last non-zero row other = -1 for i in range(matrix.shape[0] - 1, -1, -1): if matrix[i, col + extra] != 0: other = i break if other < col: extra += 1 continue # Swap rows for j in range(matrix.shape[1]): temp = matrix[col, j] matrix[col, j] = matrix[other, j] matrix[other, j] = temp # Swap used_for_row for j in range(matrix.shape[0]): temp = used_for_row[col, j] used_for_row[col, j] = used_for_row[other, j] used_for_row[other, j] = temp pivots[pivots_count] = col + extra pivots_count += 1 pivot = matrix[col, col + extra] # Validate pivot if col + extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH - 1 else: assert abs(pivot) == 2 or abs(pivot) == PH - 2 pivot //= 2 # Scale row for j in range(matrix.shape[1]): matrix[col, j] *= pivot matrix[col, j] %= PH # Find rows with non-zero entries in the current column for i in range(matrix.shape[0]): if i == col or matrix[i, col + extra] == 0: continue # Update used_for_row for j in range(matrix.shape[0]): if used_for_row[col, j]: used_for_row[i, j] = True # Eliminate entries if col < graphlen: factor = matrix[i, col + extra] for j in range(matrix.shape[1]): matrix[i, j] -= matrix[col, j] * factor else: while matrix[i, col + extra] != 0: for j in range(matrix.shape[1]): matrix[i, j] = (matrix[i, j] - matrix[col, j]) % PH # Ensure row is modulo PH for j in range(matrix.shape[1]): matrix[i, j] %= PH col += 1 # Convert used_for_row to list of lists with sorted indices result = [] for i in range(matrix.shape[0]): row_indices = [] for j in range(matrix.shape[0]): if used_for_row[i, j]: row_indices.append(j) result.append(row_indices) return result arr = np.array([[1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, -20], [1, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -14], [0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, -1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -9], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, -40], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]]) answer = rref(arr, 37) expected = [[0, 38], [0, 38], [0, 6, 28, 35, 38], [0, 6, 18, 21, 28, 35, 38], [0, 6, 28, 35, 38], [0, 6, 21, 28, 35, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 9, 10, 23, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 25, 27, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 24, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 33, 38], [0, 22, 29, 38], [0, 22, 29, 38], [0, 6, 28, 35, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [14, 18, 21, 28, 35]] assert answer == expected, f'Wrong answer; got {answer} instead of {expected}' print('All tests passed') |
All tests passed
Testing if the previous output contains the string All tests passed
: True
Testing if the previous output contains the string njit
: True
Testing if the previous output contains the string nopython
: False
Testing if the previous output contains the string import numba
: False
Testing if the previous output contains the string from numba
: True
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Here's a Numba-optimized version of the `rref` function using `@njit` decorator and nopython mode:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 | import numpy as np from numba import njit @njit def rref(matrix, graphlen): PH = 16 # Create a copy of the matrix to modify matrix = matrix.copy() # Preallocate used_for_row used_for_row = [[i] for i in range(matrix.shape[0])] # Modulo operation matrix %= PH extra = 0 col = 0 pivots = [] while col + extra < matrix.shape[1] - 1 and col < matrix.shape[0]: # Check if the current pivot element is zero if matrix[col, col + extra] == 0: # Check if entire column is zero all_zero = True for i in range(matrix.shape[0]): if matrix[i, col] != 0: all_zero = False break if all_zero: extra += 1 continue # Find the last non-zero row in the column other = -1 for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: other = i if other < col: extra += 1 continue # Swap rows matrix[col], matrix[other] = matrix[other].copy(), matrix[col].copy() used_for_row[col], used_for_row[other] = used_for_row[other].copy(), used_for_row[col].copy() pivots.append(col + extra) pivot = matrix[col, col + extra] # Validation and scaling of the pivot if col + extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH - 1 else: assert abs(pivot) == 2 or abs(pivot) == PH - 2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH # Find rows with non-zero elements in the current column others = [] for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: others.append(i) # Eliminate other rows for i in others: if i == col: continue # Update used_for_row temp_set = set(used_for_row[i]) temp_set.update(used_for_row[col]) used_for_row[i] = list(temp_set) # Elimination process if col < graphlen: matrix[i] -= matrix[col] * matrix[i, col + extra] else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] %= PH col += 1 matrix %= PH # Convert used_for_row to sorted lists result = [] for row in used_for_row: result.append(sorted(row)) return result |
1 2 | import numpy as np from numba import njit |
I extracted the following code from that output:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 | import numpy as np from numba import njit @njit def rref(matrix, graphlen): PH = 16 # Create a copy of the matrix to modify matrix = matrix.copy() # Preallocate used_for_row used_for_row = [[i] for i in range(matrix.shape[0])] # Modulo operation matrix %= PH extra = 0 col = 0 pivots = [] while col + extra < matrix.shape[1] - 1 and col < matrix.shape[0]: # Check if the current pivot element is zero if matrix[col, col + extra] == 0: # Check if entire column is zero all_zero = True for i in range(matrix.shape[0]): if matrix[i, col] != 0: all_zero = False break if all_zero: extra += 1 continue # Find the last non-zero row in the column other = -1 for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: other = i if other < col: extra += 1 continue # Swap rows matrix[col], matrix[other] = matrix[other].copy(), matrix[col].copy() used_for_row[col], used_for_row[other] = used_for_row[other].copy(), used_for_row[col].copy() pivots.append(col + extra) pivot = matrix[col, col + extra] # Validation and scaling of the pivot if col + extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH - 1 else: assert abs(pivot) == 2 or abs(pivot) == PH - 2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH # Find rows with non-zero elements in the current column others = [] for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: others.append(i) # Eliminate other rows for i in others: if i == col: continue # Update used_for_row temp_set = set(used_for_row[i]) temp_set.update(used_for_row[col]) used_for_row[i] = list(temp_set) # Elimination process if col < graphlen: matrix[i] -= matrix[col] * matrix[i, col + extra] else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] %= PH col += 1 matrix %= PH # Convert used_for_row to sorted lists result = [] for row in used_for_row: result.append(sorted(row)) return result |
Running the following program:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 | import numpy as np from numba import njit @njit def rref(matrix, graphlen): PH = 16 # Create a copy of the matrix to modify matrix = matrix.copy() # Preallocate used_for_row used_for_row = [[i] for i in range(matrix.shape[0])] # Modulo operation matrix %= PH extra = 0 col = 0 pivots = [] while col + extra < matrix.shape[1] - 1 and col < matrix.shape[0]: # Check if the current pivot element is zero if matrix[col, col + extra] == 0: # Check if entire column is zero all_zero = True for i in range(matrix.shape[0]): if matrix[i, col] != 0: all_zero = False break if all_zero: extra += 1 continue # Find the last non-zero row in the column other = -1 for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: other = i if other < col: extra += 1 continue # Swap rows matrix[col], matrix[other] = matrix[other].copy(), matrix[col].copy() used_for_row[col], used_for_row[other] = used_for_row[other].copy(), used_for_row[col].copy() pivots.append(col + extra) pivot = matrix[col, col + extra] # Validation and scaling of the pivot if col + extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH - 1 else: assert abs(pivot) == 2 or abs(pivot) == PH - 2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH # Find rows with non-zero elements in the current column others = [] for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: others.append(i) # Eliminate other rows for i in others: if i == col: continue # Update used_for_row temp_set = set(used_for_row[i]) temp_set.update(used_for_row[col]) used_for_row[i] = list(temp_set) # Elimination process if col < graphlen: matrix[i] -= matrix[col] * matrix[i, col + extra] else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] %= PH col += 1 matrix %= PH # Convert used_for_row to sorted lists result = [] for row in used_for_row: result.append(sorted(row)) return result arr = np.array([[1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, -20], [1, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -14], [0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, -1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -9], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, -40], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]]) answer = rref(arr, 37) expected = [[0, 38], [0, 38], [0, 6, 28, 35, 38], [0, 6, 18, 21, 28, 35, 38], [0, 6, 28, 35, 38], [0, 6, 21, 28, 35, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 9, 10, 23, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 25, 27, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 24, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 33, 38], [0, 22, 29, 38], [0, 22, 29, 38], [0, 6, 28, 35, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [14, 18, 21, 28, 35]] assert answer == expected, f'Wrong answer; got {answer} instead of {expected}' print('All tests passed') |
All tests passed
Testing if the previous output contains the string All tests passed
: True
Testing if the previous output contains the string njit
: True
Testing if the previous output contains the string nopython
: False
Testing if the previous output contains the string import numba
: False
Testing if the previous output contains the string from numba
: True
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Here's a version of the function rewritten using Numba with nopython mode:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 | import numpy as np from numba import njit @njit def rref(matrix, graphlen): PH = 16 matrix = matrix % PH matrix_shape_0 = matrix.shape[0] matrix_shape_1 = matrix.shape[1] # Initialize used_for_row as a list of lists used_for_row = [[i] for i in range(matrix_shape_0)] extra = 0 col = 0 pivots = [] while col + extra < matrix_shape_1 - 1 and col < matrix_shape_0: # Check if pivot element is zero if matrix[col, col + extra] == 0: # Check if entire column is zero all_zero = True for i in range(matrix_shape_0): if matrix[i, col + extra] != 0: all_zero = False break if all_zero: extra += 1 continue # Find last non-zero row in the column other = -1 for i in range(matrix_shape_0): if matrix[i, col + extra] != 0: other = i if other < col: extra += 1 continue # Swap rows temp_row = matrix[col].copy() matrix[col] = matrix[other] matrix[other] = temp_row # Swap used_for_row entries temp_used = used_for_row[col].copy() used_for_row[col] = used_for_row[other].copy() used_for_row[other] = temp_used pivots.append(col + extra) pivot = matrix[col, col + extra] # Pivot validation if col + extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH - 1 else: assert abs(pivot) == 2 or abs(pivot) == PH - 2 pivot //= 2 # Scale row matrix[col] *= pivot matrix[col] %= PH # Eliminate other rows for i in range(matrix_shape_0): if i == col: continue if matrix[i, col + extra] != 0: # Merge used_for_row for used_val in used_for_row[col]: if used_val not in used_for_row[i]: used_for_row[i].append(used_val) # Row reduction if col < graphlen: matrix[i] -= matrix[col] * matrix[i, col + extra] else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] %= PH col += 1 matrix %= PH # Convert used_for_row to sorted lists sorted_used_for_row = [sorted(x) for x in used_for_row] return sorted_used_for_row |
I extracted the following code from that output:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 | import numpy as np from numba import njit @njit def rref(matrix, graphlen): PH = 16 matrix = matrix % PH matrix_shape_0 = matrix.shape[0] matrix_shape_1 = matrix.shape[1] # Initialize used_for_row as a list of lists used_for_row = [[i] for i in range(matrix_shape_0)] extra = 0 col = 0 pivots = [] while col + extra < matrix_shape_1 - 1 and col < matrix_shape_0: # Check if pivot element is zero if matrix[col, col + extra] == 0: # Check if entire column is zero all_zero = True for i in range(matrix_shape_0): if matrix[i, col + extra] != 0: all_zero = False break if all_zero: extra += 1 continue # Find last non-zero row in the column other = -1 for i in range(matrix_shape_0): if matrix[i, col + extra] != 0: other = i if other < col: extra += 1 continue # Swap rows temp_row = matrix[col].copy() matrix[col] = matrix[other] matrix[other] = temp_row # Swap used_for_row entries temp_used = used_for_row[col].copy() used_for_row[col] = used_for_row[other].copy() used_for_row[other] = temp_used pivots.append(col + extra) pivot = matrix[col, col + extra] # Pivot validation if col + extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH - 1 else: assert abs(pivot) == 2 or abs(pivot) == PH - 2 pivot //= 2 # Scale row matrix[col] *= pivot matrix[col] %= PH # Eliminate other rows for i in range(matrix_shape_0): if i == col: continue if matrix[i, col + extra] != 0: # Merge used_for_row for used_val in used_for_row[col]: if used_val not in used_for_row[i]: used_for_row[i].append(used_val) # Row reduction if col < graphlen: matrix[i] -= matrix[col] * matrix[i, col + extra] else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] %= PH col += 1 matrix %= PH # Convert used_for_row to sorted lists sorted_used_for_row = [sorted(x) for x in used_for_row] return sorted_used_for_row |
Running the following program:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 | import numpy as np from numba import njit @njit def rref(matrix, graphlen): PH = 16 matrix = matrix % PH matrix_shape_0 = matrix.shape[0] matrix_shape_1 = matrix.shape[1] # Initialize used_for_row as a list of lists used_for_row = [[i] for i in range(matrix_shape_0)] extra = 0 col = 0 pivots = [] while col + extra < matrix_shape_1 - 1 and col < matrix_shape_0: # Check if pivot element is zero if matrix[col, col + extra] == 0: # Check if entire column is zero all_zero = True for i in range(matrix_shape_0): if matrix[i, col + extra] != 0: all_zero = False break if all_zero: extra += 1 continue # Find last non-zero row in the column other = -1 for i in range(matrix_shape_0): if matrix[i, col + extra] != 0: other = i if other < col: extra += 1 continue # Swap rows temp_row = matrix[col].copy() matrix[col] = matrix[other] matrix[other] = temp_row # Swap used_for_row entries temp_used = used_for_row[col].copy() used_for_row[col] = used_for_row[other].copy() used_for_row[other] = temp_used pivots.append(col + extra) pivot = matrix[col, col + extra] # Pivot validation if col + extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH - 1 else: assert abs(pivot) == 2 or abs(pivot) == PH - 2 pivot //= 2 # Scale row matrix[col] *= pivot matrix[col] %= PH # Eliminate other rows for i in range(matrix_shape_0): if i == col: continue if matrix[i, col + extra] != 0: # Merge used_for_row for used_val in used_for_row[col]: if used_val not in used_for_row[i]: used_for_row[i].append(used_val) # Row reduction if col < graphlen: matrix[i] -= matrix[col] * matrix[i, col + extra] else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] %= PH col += 1 matrix %= PH # Convert used_for_row to sorted lists sorted_used_for_row = [sorted(x) for x in used_for_row] return sorted_used_for_row arr = np.array([[1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, -20], [1, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -14], [0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, -1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -9], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, -40], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]]) answer = rref(arr, 37) expected = [[0, 38], [0, 38], [0, 6, 28, 35, 38], [0, 6, 18, 21, 28, 35, 38], [0, 6, 28, 35, 38], [0, 6, 21, 28, 35, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 9, 10, 23, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 25, 27, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 24, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 33, 38], [0, 22, 29, 38], [0, 22, 29, 38], [0, 6, 28, 35, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [14, 18, 21, 28, 35]] assert answer == expected, f'Wrong answer; got {answer} instead of {expected}' print('All tests passed') |
All tests passed
Testing if the previous output contains the string All tests passed
: True
Testing if the previous output contains the string njit
: True
Testing if the previous output contains the string nopython
: False
Testing if the previous output contains the string import numba
: False
Testing if the previous output contains the string from numba
: True
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Here's a Numba-optimized version of the `rref` function using `@njit` decorator and nopython mode:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 | import numpy as np from numba import njit @njit def rref(matrix, graphlen): PH = 16 m, n = matrix.shape extra = 0 col = 0 pivots = [] # Initialize used_for_row as a list of sets used_for_row = [set([i]) for i in range(m)] # Mod matrix by PH matrix %= PH while col + extra < n - 1 and col < m: # Check if current pivot is zero if matrix[col, col + extra] == 0: # Check if entire column is zero all_zero = True for i in range(m): if matrix[i, col + extra] != 0: all_zero = False break if all_zero: extra += 1 continue # Find last non-zero entry in column other = -1 for i in range(m): if matrix[i, col + extra] != 0: other = i if other < col: extra += 1 continue # Swap rows matrix[col], matrix[other] = matrix[other].copy(), matrix[col].copy() used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col + extra) pivot = matrix[col, col + extra] # Validate pivot if col + extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH - 1 else: assert abs(pivot) == 2 or abs(pivot) == PH - 2 pivot //= 2 # Scale row matrix[col] *= pivot matrix[col] %= PH # Find rows with non-zero entries in the column others = [] for i in range(m): if matrix[i, col + extra] != 0: others.append(i) # Eliminate entries in other rows for i in others: if i == col: continue # Update used rows used_for_row[i] = set(list(used_for_row[i]) + list(used_for_row[col])) # Eliminate entry if col < graphlen: matrix[i] -= matrix[col] * matrix[i, col + extra] else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] %= PH col += 1 matrix %= PH # Convert sets to sorted lists used_for_row_list = [] for row_set in used_for_row: used_for_row_list.append(sorted(list(row_set))) return used_for_row_list |
1 2 | import numpy as np from numba import njit |
1 | result = rref(matrix, graphlen) |
I extracted the following code from that output:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 | import numpy as np from numba import njit @njit def rref(matrix, graphlen): PH = 16 m, n = matrix.shape extra = 0 col = 0 pivots = [] # Initialize used_for_row as a list of sets used_for_row = [set([i]) for i in range(m)] # Mod matrix by PH matrix %= PH while col + extra < n - 1 and col < m: # Check if current pivot is zero if matrix[col, col + extra] == 0: # Check if entire column is zero all_zero = True for i in range(m): if matrix[i, col + extra] != 0: all_zero = False break if all_zero: extra += 1 continue # Find last non-zero entry in column other = -1 for i in range(m): if matrix[i, col + extra] != 0: other = i if other < col: extra += 1 continue # Swap rows matrix[col], matrix[other] = matrix[other].copy(), matrix[col].copy() used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col + extra) pivot = matrix[col, col + extra] # Validate pivot if col + extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH - 1 else: assert abs(pivot) == 2 or abs(pivot) == PH - 2 pivot //= 2 # Scale row matrix[col] *= pivot matrix[col] %= PH # Find rows with non-zero entries in the column others = [] for i in range(m): if matrix[i, col + extra] != 0: others.append(i) # Eliminate entries in other rows for i in others: if i == col: continue # Update used rows used_for_row[i] = set(list(used_for_row[i]) + list(used_for_row[col])) # Eliminate entry if col < graphlen: matrix[i] -= matrix[col] * matrix[i, col + extra] else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] %= PH col += 1 matrix %= PH # Convert sets to sorted lists used_for_row_list = [] for row_set in used_for_row: used_for_row_list.append(sorted(list(row_set))) return used_for_row_list |
Running the following program:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 | import numpy as np from numba import njit @njit def rref(matrix, graphlen): PH = 16 m, n = matrix.shape extra = 0 col = 0 pivots = [] # Initialize used_for_row as a list of sets used_for_row = [set([i]) for i in range(m)] # Mod matrix by PH matrix %= PH while col + extra < n - 1 and col < m: # Check if current pivot is zero if matrix[col, col + extra] == 0: # Check if entire column is zero all_zero = True for i in range(m): if matrix[i, col + extra] != 0: all_zero = False break if all_zero: extra += 1 continue # Find last non-zero entry in column other = -1 for i in range(m): if matrix[i, col + extra] != 0: other = i if other < col: extra += 1 continue # Swap rows matrix[col], matrix[other] = matrix[other].copy(), matrix[col].copy() used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col + extra) pivot = matrix[col, col + extra] # Validate pivot if col + extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH - 1 else: assert abs(pivot) == 2 or abs(pivot) == PH - 2 pivot //= 2 # Scale row matrix[col] *= pivot matrix[col] %= PH # Find rows with non-zero entries in the column others = [] for i in range(m): if matrix[i, col + extra] != 0: others.append(i) # Eliminate entries in other rows for i in others: if i == col: continue # Update used rows used_for_row[i] = set(list(used_for_row[i]) + list(used_for_row[col])) # Eliminate entry if col < graphlen: matrix[i] -= matrix[col] * matrix[i, col + extra] else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] %= PH col += 1 matrix %= PH # Convert sets to sorted lists used_for_row_list = [] for row_set in used_for_row: used_for_row_list.append(sorted(list(row_set))) return used_for_row_list arr = np.array([[1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, -20], [1, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -14], [0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, -1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -9], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, -40], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]]) answer = rref(arr, 37) expected = [[0, 38], [0, 38], [0, 6, 28, 35, 38], [0, 6, 18, 21, 28, 35, 38], [0, 6, 28, 35, 38], [0, 6, 21, 28, 35, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 9, 10, 23, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 25, 27, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 24, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 33, 38], [0, 22, 29, 38], [0, 22, 29, 38], [0, 6, 28, 35, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [14, 18, 21, 28, 35]] assert answer == expected, f'Wrong answer; got {answer} instead of {expected}' print('All tests passed') |
All tests passed
Testing if the previous output contains the string All tests passed
: True
Testing if the previous output contains the string njit
: True
Testing if the previous output contains the string nopython
: False
Testing if the previous output contains the string import numba
: False
Testing if the previous output contains the string from numba
: True
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Rewrite this function to use numba and nopython mode. You can assume that the input is a 2d matrix correctly formatted. Call it rref still. def rref(matrix, graphlen): PH = 16 extra = 0 col = 0 pivots = [] used_for_row = [set([i]) for i in range(matrix.shape[0])] matrix = matrix%PH while col+extra < matrix.shape[1]-1 and col < matrix.shape[0]: if matrix[col,col+extra] == 0: if np.all(matrix[:,col] == 0): extra += 1 continue other = np.argwhere(matrix[:,col+extra] != 0).flatten()[-1] if other < col: extra += 1 continue matrix[col], matrix[other] = list(matrix[other]), list(matrix[col]) used_for_row[col], used_for_row[other] = used_for_row[other], used_for_row[col] pivots.append(col+extra) pivot = matrix[col,col+extra] if col+extra < graphlen: assert np.abs(pivot) == 1 or np.abs(pivot) == PH-1 else: assert np.abs(pivot) == 2 or np.abs(pivot) == PH-2 pivot //= 2 matrix[col] *= pivot matrix[col] %= PH others = np.argwhere(matrix[:,col+extra]).flatten() for i in others: if i == col: continue used_for_row[i] |= used_for_row[col] if col < graphlen: matrix[i] -= matrix[col]*matrix[i,col+extra] else: while matrix[i,col+extra] != 0: matrix[i] = (matrix[i]-matrix[col])%PH matrix[i] %= PH col += 1 matrix = np.array(matrix)%PH return [sorted(x) for x in used_for_row]
Here's a Numba-optimized version of the function using nopython mode:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 | import numpy as np from numba import njit @njit def rref(matrix, graphlen): PH = 16 # Create a copy of the matrix to avoid modifying the original matrix = matrix.copy() extra = 0 col = 0 pivots = [] # Initialize used_for_row as a list of sets used_for_row = [[i] for i in range(matrix.shape[0])] # Perform modulo operation on entire matrix matrix %= PH while col + extra < matrix.shape[1] - 1 and col < matrix.shape[0]: # Check if current pivot element is zero if matrix[col, col + extra] == 0: # Check if entire column is zero all_zero = True for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: all_zero = False break if all_zero: extra += 1 continue # Find last non-zero element in column other = -1 for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: other = i if other < col: extra += 1 continue # Swap rows matrix[col], matrix[other] = matrix[other].copy(), matrix[col].copy() used_for_row[col], used_for_row[other] = used_for_row[other].copy(), used_for_row[col].copy() pivots.append(col + extra) pivot = matrix[col, col + extra] # Validate pivot based on graphlen if col + extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH - 1 else: assert abs(pivot) == 2 or abs(pivot) == PH - 2 pivot //= 2 # Scale row by pivot matrix[col] *= pivot matrix[col] %= PH # Find indices of non-zero elements in current column others = [] for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: others.append(i) # Eliminate other rows for i in others: if i == col: continue # Combine used columns used_for_row[i] = list(set(used_for_row[i] + used_for_row[col])) # Reduce row if col < graphlen: matrix[i] -= matrix[col] * matrix[i, col + extra] else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] %= PH col += 1 # Final modulo operation matrix %= PH # Convert used_for_row to sorted lists sorted_used_for_row = [sorted(x) for x in used_for_row] return sorted_used_for_row |
1 | result = rref(np.array(matrix), graphlen) |
I extracted the following code from that output:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 | import numpy as np from numba import njit @njit def rref(matrix, graphlen): PH = 16 # Create a copy of the matrix to avoid modifying the original matrix = matrix.copy() extra = 0 col = 0 pivots = [] # Initialize used_for_row as a list of sets used_for_row = [[i] for i in range(matrix.shape[0])] # Perform modulo operation on entire matrix matrix %= PH while col + extra < matrix.shape[1] - 1 and col < matrix.shape[0]: # Check if current pivot element is zero if matrix[col, col + extra] == 0: # Check if entire column is zero all_zero = True for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: all_zero = False break if all_zero: extra += 1 continue # Find last non-zero element in column other = -1 for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: other = i if other < col: extra += 1 continue # Swap rows matrix[col], matrix[other] = matrix[other].copy(), matrix[col].copy() used_for_row[col], used_for_row[other] = used_for_row[other].copy(), used_for_row[col].copy() pivots.append(col + extra) pivot = matrix[col, col + extra] # Validate pivot based on graphlen if col + extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH - 1 else: assert abs(pivot) == 2 or abs(pivot) == PH - 2 pivot //= 2 # Scale row by pivot matrix[col] *= pivot matrix[col] %= PH # Find indices of non-zero elements in current column others = [] for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: others.append(i) # Eliminate other rows for i in others: if i == col: continue # Combine used columns used_for_row[i] = list(set(used_for_row[i] + used_for_row[col])) # Reduce row if col < graphlen: matrix[i] -= matrix[col] * matrix[i, col + extra] else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] %= PH col += 1 # Final modulo operation matrix %= PH # Convert used_for_row to sorted lists sorted_used_for_row = [sorted(x) for x in used_for_row] return sorted_used_for_row |
Running the following program:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 | import numpy as np from numba import njit @njit def rref(matrix, graphlen): PH = 16 # Create a copy of the matrix to avoid modifying the original matrix = matrix.copy() extra = 0 col = 0 pivots = [] # Initialize used_for_row as a list of sets used_for_row = [[i] for i in range(matrix.shape[0])] # Perform modulo operation on entire matrix matrix %= PH while col + extra < matrix.shape[1] - 1 and col < matrix.shape[0]: # Check if current pivot element is zero if matrix[col, col + extra] == 0: # Check if entire column is zero all_zero = True for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: all_zero = False break if all_zero: extra += 1 continue # Find last non-zero element in column other = -1 for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: other = i if other < col: extra += 1 continue # Swap rows matrix[col], matrix[other] = matrix[other].copy(), matrix[col].copy() used_for_row[col], used_for_row[other] = used_for_row[other].copy(), used_for_row[col].copy() pivots.append(col + extra) pivot = matrix[col, col + extra] # Validate pivot based on graphlen if col + extra < graphlen: assert abs(pivot) == 1 or abs(pivot) == PH - 1 else: assert abs(pivot) == 2 or abs(pivot) == PH - 2 pivot //= 2 # Scale row by pivot matrix[col] *= pivot matrix[col] %= PH # Find indices of non-zero elements in current column others = [] for i in range(matrix.shape[0]): if matrix[i, col + extra] != 0: others.append(i) # Eliminate other rows for i in others: if i == col: continue # Combine used columns used_for_row[i] = list(set(used_for_row[i] + used_for_row[col])) # Reduce row if col < graphlen: matrix[i] -= matrix[col] * matrix[i, col + extra] else: while matrix[i, col + extra] != 0: matrix[i] = (matrix[i] - matrix[col]) % PH matrix[i] %= PH col += 1 # Final modulo operation matrix %= PH # Convert used_for_row to sorted lists sorted_used_for_row = [sorted(x) for x in used_for_row] return sorted_used_for_row arr = np.array([[1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, 0, -20], [1, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -14], [0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, 0, -30], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, -1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, -1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, 0, -20], [0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, 0, -10], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -13], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -11], [0, 0, 1, 0, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -9], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, 0, -20], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, -1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -2, -40], [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]]) answer = rref(arr, 37) expected = [[0, 38], [0, 38], [0, 6, 28, 35, 38], [0, 6, 18, 21, 28, 35, 38], [0, 6, 28, 35, 38], [0, 6, 21, 28, 35, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 10, 23, 38], [0, 5, 9, 10, 23, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 27, 38], [0, 5, 9, 10, 11, 23, 25, 27, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 24, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 5, 7, 8, 9, 10, 11, 12, 15, 16, 19, 23, 25, 26, 27, 34, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 38], [0, 5, 9, 10, 13, 17, 23, 30, 32, 33, 38], [0, 22, 29, 38], [0, 22, 29, 38], [0, 6, 28, 35, 38], [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 16, 19, 20, 21, 23, 25, 26, 27, 28, 31, 34, 35, 36, 37, 38], [14, 18, 21, 28, 35]] assert answer == expected, f'Wrong answer; got {answer} instead of {expected}' print('All tests passed') |
All tests passed
Testing if the previous output contains the string All tests passed
: True
Testing if the previous output contains the string njit
: True
Testing if the previous output contains the string nopython
: False
Testing if the previous output contains the string import numba
: False
Testing if the previous output contains the string from numba
: True