I have setup the docker container to run the model evaluation.
I have a list of several thousand file paths in /tmp/files. Write a python script that merges the content int 16 files called /tmp/merged_%d for i in 0..15 where each is approximately the same size. "/tmp/files" is a list of file paths, one per line.
I have a list of several thousand file paths in /tmp/files. Write a python script that merges the content int 16 files called /tmp/merged_%d for i in 0..15 where each is approximately the same size. "/tmp/files" is a list of file paths, one per line.
Certainly! Below is a Python script that accomplishes the task of merging several thousand files listed in `/tmp/files` into 16 merged files (`/tmp/merged_0` through `/tmp/merged_15`) with approximately equal total sizes. ### Overview of the Script 1. **Read File Paths**: Reads all file paths from `/tmp/files`, assuming each line contains one file path. 2. **Retrieve File Sizes**: Determines the size of each file to aid in balanced distribution. 3. **Sort Files**: Sorts the files in descending order based on their sizes to optimize the balancing process. 4. **Assign Files to Merged Outputs**: Uses a greedy algorithm to assign each file to the merged file with the current smallest total size. 5. **Merge Files**: Reads the content of each input file and appends it to the appropriate merged output file. ### Python Script
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 | #!/usr/bin/env python3 import os import sys from collections import defaultdict def read_file_paths(file_list_path): """Reads file paths from the given file.""" with open(file_list_path, 'r') as f: file_paths = [line.strip() for line in f if line.strip()] return file_paths def get_file_sizes(file_paths): """Returns a list of tuples (file_path, size).""" files_with_sizes = [] for path in file_paths: try: size = os.path.getsize(path) files_with_sizes.append((path, size)) except OSError as e: print(f"Warning: Could not access {path}. Skipping. Error: {e}", file=sys.stderr) return files_with_sizes def assign_files_to_merges(files_with_sizes, num_merges=16): """ Assigns each file to one of the merged files aiming for balanced total sizes. Returns a dictionary mapping merge index to list of file paths. """ # Sort files by size descending sorted_files = sorted(files_with_sizes, key=lambda x: x[1], reverse=True) # Initialize merge assignments and their current total sizes merge_assignments = defaultdict(list) merge_sizes = [0] * num_merges for file_path, size in sorted_files: # Find the merge index with the smallest current size min_index = merge_sizes.index(min(merge_sizes)) merge_assignments[min_index].append(file_path) merge_sizes[min_index] += size return merge_assignments def merge_files(merge_assignments, output_dir='/tmp', output_prefix='merged_', num_merges=16): """ Merges the assigned files into the respective merged output files. """ for merge_index in range(num_merges): output_file_path = os.path.join(output_dir, f"{output_prefix}{merge_index}") assigned_files = merge_assignments.get(merge_index, []) if not assigned_files: print(f"No files assigned to {output_file_path}. Skipping.") continue try: with open(output_file_path, 'wb') as outfile: for file_path in assigned_files: try: with open(file_path, 'rb') as infile: while True: chunk = infile.read(1024 * 1024) # Read in 1MB chunks if not chunk: break outfile.write(chunk) except OSError as e: print(f"Warning: Could not read {file_path}. Skipping. Error: {e}", file=sys.stderr) print(f"Merged {len(assigned_files)} files into {output_file_path}") except OSError as e: print(f"Error: Could not write to {output_file_path}. Error: {e}", file=sys.stderr) def main(): file_list_path = '/tmp/files' num_merges = 16 output_dir = '/tmp' output_prefix = 'merged_' print("Reading file paths...") file_paths = read_file_paths(file_list_path) print(f"Total files read: {len(file_paths)}") print("Retrieving file sizes...") files_with_sizes = get_file_sizes(file_paths) print(f"Total accessible files: {len(files_with_sizes)}") print("Assigning files to merged outputs...") merge_assignments = assign_files_to_merges(files_with_sizes, num_merges) # Optional: Print the total size assigned to each merge merge_sizes = [0] * num_merges for merge_index, files in merge_assignments.items(): for file_path in files: size = os.path.getsize(file_path) merge_sizes[merge_index] += size for i, size in enumerate(merge_sizes): print(f"Merged_{i}: {size} bytes across {len(merge_assignments[i])} files") print("Merging files...") merge_files(merge_assignments, output_dir, output_prefix, num_merges) print("Merging completed.") if __name__ == "__main__": main() |
1 2 | chmod +x merge_files.py |
1 2 | ./merge_files.py |
1 2 | python3 merge_files.py |
I extracted the following code from that output:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 | #!/usr/bin/env python3 import os import sys from collections import defaultdict def read_file_paths(file_list_path): """Reads file paths from the given file.""" with open(file_list_path, 'r') as f: file_paths = [line.strip() for line in f if line.strip()] return file_paths def get_file_sizes(file_paths): """Returns a list of tuples (file_path, size).""" files_with_sizes = [] for path in file_paths: try: size = os.path.getsize(path) files_with_sizes.append((path, size)) except OSError as e: print(f"Warning: Could not access {path}. Skipping. Error: {e}", file=sys.stderr) return files_with_sizes def assign_files_to_merges(files_with_sizes, num_merges=16): """ Assigns each file to one of the merged files aiming for balanced total sizes. Returns a dictionary mapping merge index to list of file paths. """ # Sort files by size descending sorted_files = sorted(files_with_sizes, key=lambda x: x[1], reverse=True) # Initialize merge assignments and their current total sizes merge_assignments = defaultdict(list) merge_sizes = [0] * num_merges for file_path, size in sorted_files: # Find the merge index with the smallest current size min_index = merge_sizes.index(min(merge_sizes)) merge_assignments[min_index].append(file_path) merge_sizes[min_index] += size return merge_assignments def merge_files(merge_assignments, output_dir='/tmp', output_prefix='merged_', num_merges=16): """ Merges the assigned files into the respective merged output files. """ for merge_index in range(num_merges): output_file_path = os.path.join(output_dir, f"{output_prefix}{merge_index}") assigned_files = merge_assignments.get(merge_index, []) if not assigned_files: print(f"No files assigned to {output_file_path}. Skipping.") continue try: with open(output_file_path, 'wb') as outfile: for file_path in assigned_files: try: with open(file_path, 'rb') as infile: while True: chunk = infile.read(1024 * 1024) # Read in 1MB chunks if not chunk: break outfile.write(chunk) except OSError as e: print(f"Warning: Could not read {file_path}. Skipping. Error: {e}", file=sys.stderr) print(f"Merged {len(assigned_files)} files into {output_file_path}") except OSError as e: print(f"Error: Could not write to {output_file_path}. Error: {e}", file=sys.stderr) def main(): file_list_path = '/tmp/files' num_merges = 16 output_dir = '/tmp' output_prefix = 'merged_' print("Reading file paths...") file_paths = read_file_paths(file_list_path) print(f"Total files read: {len(file_paths)}") print("Retrieving file sizes...") files_with_sizes = get_file_sizes(file_paths) print(f"Total accessible files: {len(files_with_sizes)}") print("Assigning files to merged outputs...") merge_assignments = assign_files_to_merges(files_with_sizes, num_merges) # Optional: Print the total size assigned to each merge merge_sizes = [0] * num_merges for merge_index, files in merge_assignments.items(): for file_path in files: size = os.path.getsize(file_path) merge_sizes[merge_index] += size for i, size in enumerate(merge_sizes): print(f"Merged_{i}: {size} bytes across {len(merge_assignments[i])} files") print("Merging files...") merge_files(merge_assignments, output_dir, output_prefix, num_merges) print("Merging completed.") if __name__ == "__main__": main() |
Running the following program:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 | #!/usr/bin/env python3 import os import sys from collections import defaultdict def read_file_paths(file_list_path): """Reads file paths from the given file.""" with open(file_list_path, 'r') as f: file_paths = [line.strip() for line in f if line.strip()] return file_paths def get_file_sizes(file_paths): """Returns a list of tuples (file_path, size).""" files_with_sizes = [] for path in file_paths: try: size = os.path.getsize(path) files_with_sizes.append((path, size)) except OSError as e: print(f"Warning: Could not access {path}. Skipping. Error: {e}", file=sys.stderr) return files_with_sizes def assign_files_to_merges(files_with_sizes, num_merges=16): """ Assigns each file to one of the merged files aiming for balanced total sizes. Returns a dictionary mapping merge index to list of file paths. """ # Sort files by size descending sorted_files = sorted(files_with_sizes, key=lambda x: x[1], reverse=True) # Initialize merge assignments and their current total sizes merge_assignments = defaultdict(list) merge_sizes = [0] * num_merges for file_path, size in sorted_files: # Find the merge index with the smallest current size min_index = merge_sizes.index(min(merge_sizes)) merge_assignments[min_index].append(file_path) merge_sizes[min_index] += size return merge_assignments def merge_files(merge_assignments, output_dir='/tmp', output_prefix='merged_', num_merges=16): """ Merges the assigned files into the respective merged output files. """ for merge_index in range(num_merges): output_file_path = os.path.join(output_dir, f"{output_prefix}{merge_index}") assigned_files = merge_assignments.get(merge_index, []) if not assigned_files: print(f"No files assigned to {output_file_path}. Skipping.") continue try: with open(output_file_path, 'wb') as outfile: for file_path in assigned_files: try: with open(file_path, 'rb') as infile: while True: chunk = infile.read(1024 * 1024) # Read in 1MB chunks if not chunk: break outfile.write(chunk) except OSError as e: print(f"Warning: Could not read {file_path}. Skipping. Error: {e}", file=sys.stderr) print(f"Merged {len(assigned_files)} files into {output_file_path}") except OSError as e: print(f"Error: Could not write to {output_file_path}. Error: {e}", file=sys.stderr) def main(): file_list_path = '/tmp/files' num_merges = 16 output_dir = '/tmp' output_prefix = 'merged_' print("Reading file paths...") file_paths = read_file_paths(file_list_path) print(f"Total files read: {len(file_paths)}") print("Retrieving file sizes...") files_with_sizes = get_file_sizes(file_paths) print(f"Total accessible files: {len(files_with_sizes)}") print("Assigning files to merged outputs...") merge_assignments = assign_files_to_merges(files_with_sizes, num_merges) # Optional: Print the total size assigned to each merge merge_sizes = [0] * num_merges for merge_index, files in merge_assignments.items(): for file_path in files: size = os.path.getsize(file_path) merge_sizes[merge_index] += size for i, size in enumerate(merge_sizes): print(f"Merged_{i}: {size} bytes across {len(merge_assignments[i])} files") print("Merging files...") merge_files(merge_assignments, output_dir, output_prefix, num_merges) print("Merging completed.") if __name__ == "__main__": main() |
Reading file paths...
Total files read: 1000
Retrieving file sizes...
Total accessible files: 1000
Assigning files to merged outputs...
Merged_0: 38388 bytes across 40 files
Merged_1: 38381 bytes across 43 files
Merged_2: 38392 bytes across 43 files
Merged_3: 38392 bytes across 45 files
Merged_4: 38379 bytes across 59 files
Merged_5: 38387 bytes across 70 files
Merged_6: 38392 bytes across 70 files
Merged_7: 38391 bytes across 70 files
Merged_8: 38385 bytes across 70 files
Merged_9: 38389 bytes across 70 files
Merged_10: 38390 bytes across 70 files
Merged_11: 38390 bytes across 70 files
Merged_12: 38381 bytes across 70 files
Merged_13: 38388 bytes across 70 files
Merged_14: 38388 bytes across 70 files
Merged_15: 38387 bytes across 70 files
Merging files...
Merged 40 files into /tmp/merged_0
Merged 43 files into /tmp/merged_1
Merged 43 files into /tmp/merged_2
Merged 45 files into /tmp/merged_3
Merged 59 files into /tmp/merged_4
Merged 70 files into /tmp/merged_5
Merged 70 files into /tmp/merged_6
Merged 70 files into /tmp/merged_7
Merged 70 files into /tmp/merged_8
Merged 70 files into /tmp/merged_9
Merged 70 files into /tmp/merged_10
Merged 70 files into /tmp/merged_11
Merged 70 files into /tmp/merged_12
Merged 70 files into /tmp/merged_13
Merged 70 files into /tmp/merged_14
Merged 70 files into /tmp/merged_15
Merging completed.
final: True Resulting in output: True
I have setup the docker container to run the model evaluation.
I have a list of several thousand file paths in /tmp/files. Write a python script that merges the content int 16 files called /tmp/merged_%d for i in 0..15 where each is approximately the same size. "/tmp/files" is a list of file paths, one per line.
I have a list of several thousand file paths in /tmp/files. Write a python script that merges the content int 16 files called /tmp/merged_%d for i in 0..15 where each is approximately the same size. "/tmp/files" is a list of file paths, one per line.
Certainly! Below is a Python script that reads a list of file paths from `/tmp/files`, assigns each file to one of 16 merged output files (`/tmp/merged_0` to `/tmp/merged_15`) to ensure that each merged file is approximately the same size, and then concatenates the contents accordingly. ### Explanation: 1. **Read File Paths and Sizes:** - The script reads each file path from `/tmp/files` and retrieves its size in bytes. 2. **Sort Files by Size (Descending):** - To distribute the files more evenly, it sorts them in descending order based on their sizes. This helps in balancing the total sizes across the merged files using a greedy approach. 3. **Assign Files to Merged Outputs:** - The script maintains a list of 16 merged files and keeps track of the current total size for each. - For each file, it assigns it to the merged file with the smallest current total size. 4. **Concatenate File Contents:** - After assignment, the script opens each merged file and writes the contents of its assigned files sequentially. ### Python Script:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 | #!/usr/bin/env python3 import os import sys from collections import defaultdict def main(): input_list = '/tmp/files' output_dir = '/tmp' num_outputs = 16 output_files = [os.path.join(output_dir, f'merged_{i}') for i in range(num_outputs)] # Step 1: Read file paths and sizes files = [] try: with open(input_list, 'r') as f: for line in f: filepath = line.strip() if not filepath: continue try: size = os.path.getsize(filepath) files.append((filepath, size)) except OSError as e: print(f"Warning: Could not access {filepath}: {e}", file=sys.stderr) except FileNotFoundError: print(f"Error: Input list {input_list} not found.", file=sys.stderr) sys.exit(1) if not files: print("No valid files to process.", file=sys.stderr) sys.exit(1) # Step 2: Sort files by size descending files.sort(key=lambda x: x[1], reverse=True) # Step 3: Assign files to merged outputs # Initialize merged file sizes merged_sizes = [0] * num_outputs merged_assignments = defaultdict(list) # key: output index, value: list of file paths for filepath, size in files: # Find the merged file with the smallest current size min_index = merged_sizes.index(min(merged_sizes)) merged_assignments[min_index].append(filepath) merged_sizes[min_index] += size # Step 4: Write to merged files for i in range(num_outputs): output_path = output_files[i] print(f"Writing to {output_path} with {len(merged_assignments[i])} files, total size {merged_sizes[i]} bytes.") try: with open(output_path, 'wb') as outfile: for filepath in merged_assignments[i]: try: with open(filepath, 'rb') as infile: while True: chunk = infile.read(1024 * 1024) # Read in 1MB chunks if not chunk: break outfile.write(chunk) except OSError as e: print(f"Warning: Could not read {filepath}: {e}", file=sys.stderr) except OSError as e: print(f"Error: Could not write to {output_path}: {e}", file=sys.stderr) sys.exit(1) print("Merging completed successfully.") if __name__ == '__main__': main() |
1 2 | chmod +x merge_files.py |
1 2 | ./merge_files.py |
I extracted the following code from that output:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 | #!/usr/bin/env python3 import os import sys from collections import defaultdict def main(): input_list = '/tmp/files' output_dir = '/tmp' num_outputs = 16 output_files = [os.path.join(output_dir, f'merged_{i}') for i in range(num_outputs)] # Step 1: Read file paths and sizes files = [] try: with open(input_list, 'r') as f: for line in f: filepath = line.strip() if not filepath: continue try: size = os.path.getsize(filepath) files.append((filepath, size)) except OSError as e: print(f"Warning: Could not access {filepath}: {e}", file=sys.stderr) except FileNotFoundError: print(f"Error: Input list {input_list} not found.", file=sys.stderr) sys.exit(1) if not files: print("No valid files to process.", file=sys.stderr) sys.exit(1) # Step 2: Sort files by size descending files.sort(key=lambda x: x[1], reverse=True) # Step 3: Assign files to merged outputs # Initialize merged file sizes merged_sizes = [0] * num_outputs merged_assignments = defaultdict(list) # key: output index, value: list of file paths for filepath, size in files: # Find the merged file with the smallest current size min_index = merged_sizes.index(min(merged_sizes)) merged_assignments[min_index].append(filepath) merged_sizes[min_index] += size # Step 4: Write to merged files for i in range(num_outputs): output_path = output_files[i] print(f"Writing to {output_path} with {len(merged_assignments[i])} files, total size {merged_sizes[i]} bytes.") try: with open(output_path, 'wb') as outfile: for filepath in merged_assignments[i]: try: with open(filepath, 'rb') as infile: while True: chunk = infile.read(1024 * 1024) # Read in 1MB chunks if not chunk: break outfile.write(chunk) except OSError as e: print(f"Warning: Could not read {filepath}: {e}", file=sys.stderr) except OSError as e: print(f"Error: Could not write to {output_path}: {e}", file=sys.stderr) sys.exit(1) print("Merging completed successfully.") if __name__ == '__main__': main() |
Running the following program:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 | #!/usr/bin/env python3 import os import sys from collections import defaultdict def main(): input_list = '/tmp/files' output_dir = '/tmp' num_outputs = 16 output_files = [os.path.join(output_dir, f'merged_{i}') for i in range(num_outputs)] # Step 1: Read file paths and sizes files = [] try: with open(input_list, 'r') as f: for line in f: filepath = line.strip() if not filepath: continue try: size = os.path.getsize(filepath) files.append((filepath, size)) except OSError as e: print(f"Warning: Could not access {filepath}: {e}", file=sys.stderr) except FileNotFoundError: print(f"Error: Input list {input_list} not found.", file=sys.stderr) sys.exit(1) if not files: print("No valid files to process.", file=sys.stderr) sys.exit(1) # Step 2: Sort files by size descending files.sort(key=lambda x: x[1], reverse=True) # Step 3: Assign files to merged outputs # Initialize merged file sizes merged_sizes = [0] * num_outputs merged_assignments = defaultdict(list) # key: output index, value: list of file paths for filepath, size in files: # Find the merged file with the smallest current size min_index = merged_sizes.index(min(merged_sizes)) merged_assignments[min_index].append(filepath) merged_sizes[min_index] += size # Step 4: Write to merged files for i in range(num_outputs): output_path = output_files[i] print(f"Writing to {output_path} with {len(merged_assignments[i])} files, total size {merged_sizes[i]} bytes.") try: with open(output_path, 'wb') as outfile: for filepath in merged_assignments[i]: try: with open(filepath, 'rb') as infile: while True: chunk = infile.read(1024 * 1024) # Read in 1MB chunks if not chunk: break outfile.write(chunk) except OSError as e: print(f"Warning: Could not read {filepath}: {e}", file=sys.stderr) except OSError as e: print(f"Error: Could not write to {output_path}: {e}", file=sys.stderr) sys.exit(1) print("Merging completed successfully.") if __name__ == '__main__': main() |
Writing to /tmp/merged_0 with 51 files, total size 35331 bytes.
Writing to /tmp/merged_1 with 52 files, total size 35327 bytes.
Writing to /tmp/merged_2 with 53 files, total size 35331 bytes.
Writing to /tmp/merged_3 with 54 files, total size 35326 bytes.
Writing to /tmp/merged_4 with 55 files, total size 35326 bytes.
Writing to /tmp/merged_5 with 67 files, total size 35330 bytes.
Writing to /tmp/merged_6 with 67 files, total size 35325 bytes.
Writing to /tmp/merged_7 with 67 files, total size 35330 bytes.
Writing to /tmp/merged_8 with 67 files, total size 35330 bytes.
Writing to /tmp/merged_9 with 66 files, total size 35325 bytes.
Writing to /tmp/merged_10 with 67 files, total size 35332 bytes.
Writing to /tmp/merged_11 with 67 files, total size 35331 bytes.
Writing to /tmp/merged_12 with 67 files, total size 35331 bytes.
Writing to /tmp/merged_13 with 67 files, total size 35329 bytes.
Writing to /tmp/merged_14 with 67 files, total size 35330 bytes.
Writing to /tmp/merged_15 with 66 files, total size 35325 bytes.
Merging completed successfully.
final: True Resulting in output: True