I have this program import numpy as np def diff(out, templates): return (out[:, None, :] - templates[None, :, :]).square().sum(2) Make it faster and more memory efficient without expanding the arrays. Call it `diff` still.
I have this program import numpy as np def diff(out, templates): return (out[:, None, :] - templates[None, :, :]).square().sum(2) Make it faster and more memory efficient without expanding the arrays. Call it `diff` still.
### Optimized Function We can optimize the function using NumPy's vectorized operations and Einstein summation convention. Here's a more efficient version of the `diff` function:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | import numpy as np def diff(out, templates): """ Compute the squared difference between out and templates. Parameters: out (np.ndarray): (n_samples, n_features) array templates (np.ndarray): (n_templates, n_features) array Returns: np.ndarray: (n_samples, n_templates) array of squared differences """ return np.einsum('ij,kj->ik', out, templates, optimize=True) * -2 + out.sum(axis=1)[:, None] + templates.sum(axis=1)[None, :] |
1 2 3 4 5 | out = np.array([[1, 2, 3], [4, 5, 6]]) templates = np.array([[7, 8, 9], [10, 11, 12]]) result = diff(out, templates) print(result) |
I extracted the following code from that output:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | import numpy as np def diff(out, templates): """ Compute the squared difference between out and templates. Parameters: out (np.ndarray): (n_samples, n_features) array templates (np.ndarray): (n_templates, n_features) array Returns: np.ndarray: (n_samples, n_templates) array of squared differences """ return np.einsum('ij,kj->ik', out, templates, optimize=True) * -2 + out.sum(axis=1)[:, None] + templates.sum(axis=1)[None, :] |
Below is a students answer to a question on writing efficient code. They're supposed to be vectorizing a loop. Is the following code vectorized? It is incorrect to use for loops explicitly. Think out loud, and then answer either "The student passes" or "The student fails". import numpy as np def diff(out, templates): """ Compute the squared difference between out and templates. Parameters: out (np.ndarray): (n_samples, n_features) array templates (np.ndarray): (n_templates, n_features) array Returns: np.ndarray: (n_samples, n_templates) array of squared differences """ return np.einsum('ij,kj->ik', out, templates, optimize=True) * -2 + out.sum(axis=1)[:, None] + templates.sum(axis=1)[None, :]
To determine if the student's code is vectorized, let's analyze the provided function `diff`: 1. **Understanding the Inputs and Outputs**: - `out` is an array with shape `(n_samples, n_features)`. - `templates` is an array with shape `(n_templates, n_features)`. - The function is supposed to return an array with shape `(n_samples, n_templates)` representing the squared differences between `out` and `templates`. 2. **Analyzing the Code**: - The function uses `np.einsum` with the expression `'ij,kj->ik'`. This operation computes the dot product between each row of `out` and each row of `templates`. The result is a matrix of shape `(n_samples, n_templates)`. - The result of the `einsum` operation is multiplied by `-2`. - `out.sum(axis=1)[:, None]` computes the sum of each row in `out` and reshapes it to a column vector of shape `(n_samples, 1)`. - `templates.sum(axis=1)[None, :]` computes the sum of each row in `templates` and reshapes it to a row vector of shape `(1, n_templates)`. - These two sums are added to the result of the `einsum` operation. 3. **Checking for Vectorization**: - The code does not contain any explicit `for` loops, which is a good sign for vectorization. - The use of `np.einsum` is a vectorized operation that efficiently handles the computation without explicit loops. - The summation operations and broadcasting are also vectorized, as they use NumPy's inherent capabilities to handle operations over entire arrays. 4. **Conclusion**: - The student's code is indeed vectorized. It efficiently computes the desired result using NumPy's vectorized operations without any explicit loops. Therefore, based on the analysis, the correct assessment is: **The student passes.**
Testing if the previous output contains the string student passes
: True
Running the following program:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 | import numpy as np def diff(out, templates): """ Compute the squared difference between out and templates. Parameters: out (np.ndarray): (n_samples, n_features) array templates (np.ndarray): (n_templates, n_features) array Returns: np.ndarray: (n_samples, n_templates) array of squared differences """ return np.einsum('ij,kj->ik', out, templates, optimize=True) * -2 + out.sum(axis=1)[:, None] + templates.sum(axis=1)[None, :] import tracemalloc import numpy as np if __name__ == "__main__": tracemalloc.start() # Start tracing snapshot1 = tracemalloc.take_snapshot() # Before execution diff(np.arange(10000).reshape((100, 100)), np.arange(10000).reshape((100, 100))) snapshot2 = tracemalloc.take_snapshot() # After execution # Calculate the difference in memory usage current, peak = tracemalloc.get_traced_memory() tracemalloc.stop() # Stop tracing if peak < 10**6: print("Efficient") |
Efficient
Testing if the previous output contains the string Efficient
: True
Running the following program:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 | import numpy as np def diff(out, templates): """ Compute the squared difference between out and templates. Parameters: out (np.ndarray): (n_samples, n_features) array templates (np.ndarray): (n_templates, n_features) array Returns: np.ndarray: (n_samples, n_templates) array of squared differences """ return np.einsum('ij,kj->ik', out, templates, optimize=True) * -2 + out.sum(axis=1)[:, None] + templates.sum(axis=1)[None, :] answer = diff(np.arange(100).reshape((10, 10)), np.arange(100).reshape((10, 10))).sum() expected = 1650000 assert answer == expected, f'Wrong answer; got {answer} instead of {expected}' print('All tests passed') |
Traceback (most recent call last):
File "/usr/src/app/main.py", line 23, in <module>
assert answer == expected, f'Wrong answer; got {answer} instead of {expected}'
^^^^^^^^^^^^^^^^^^
AssertionError: Wrong answer; got -4818000 instead of 1650000
Testing if the previous output contains the string All tests passed
: False